2GMC

Structure of C12-LF11 bound to the DPC micelles

• PDB DOI: https://doi.org/10.2210/pdb2GMC/pdb
• BMRB: 6437

• Classification: ANTIMICROBIAL PROTEIN
• Organism(s): synthetic construct
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2006-04-06 Released: 2007-02-13 
• Deposition Author(s): Japelj, B.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: all calculated structures submitted 

Literature

The Acyl Group as the Central Element of the Structural Organization of Antimicrobial Lipopeptide.

Japelj, B., Zorko, M., Majerle, A., Pristovsek, P., Sanchez-Gomez, S., Tejada, G.M., Moriyon, I., Blondelle, S.E., Brandenburg, K., Andra, J., Lohner, K., Jerala, R.

(2007) J Am Chem Soc 129: 1022-1023

• PubMed: 17263370 
• DOI: https://doi.org/10.1021/ja067419v
• Primary Citation of Related Structures:  
  2GMC, 2GMD

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Organizational Affiliation: 

Laboratory of Biotechnology, National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1.73 kDa 
• Atom Count: 122 
• Modelled Residue Count: 12 
• Deposited Residue Count: 12 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LACTOFERRIN-BASED SYNTHETIC PEPTIDE C12-LF11	A	12	synthetic construct	Mutation(s): 0  EC: 3.4.21 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P02788 (Homo sapiens) Explore P02788  Go to UniProtKB:  P02788
PHAROS:  P02788 GTEx:  ENSG00000012223

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DAO	B [auth A]	LAURIC ACID C12 H24 O2 POULHZVOKOAJMA-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: all calculated structures submitted 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-02-13 
Deposition Author(s): Japelj, B.

Revision History  

• Version 1.0: 2007-02-13
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2020-06-24
  Changes: Data collection, Database references, Derived calculations, Source and taxonomy
• Version 1.4: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary